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Survival-associated eQTLs across different cancer types


We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "STAD"
e.g., "rs1824937"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LGG rs2337213 chr5:167756030 C/T 8.41E-7 401 15.93 14.53 16.82 KM Plot
LGG rs2344387 chr5:92857172 A/G 0.000185 407 14.92 17.07 17.83 KM Plot
LGG rs2346462 chr14:57850353 C/T 6.7E-6 407 15.7 12.6 6.63 KM Plot
LGG rs2346764 chr5:94013775 G/A 4.32E-5 407 14.78 17.63 9.8 KM Plot
LGG rs2346765 chr5:94013827 G/A 4.32E-5 407 14.78 17.63 9.8 KM Plot
LGG rs2348336 chr7:7570608 G/A 1.11E-16 406 2.23 15.33 15.35 KM Plot
LGG rs236916 chr11:117089628 G/A 1.04E-9 402 14.78 16.9 1.83 KM Plot
LGG rs2383292 chr9:23793644 C/G 0.000136 407 16.37 17.7 15.13 KM Plot
LGG rs2406701 chr13:48555986 G/A 1.25E-5 406 15.37 15.22 4.17 KM Plot
LGG rs2410561 chr8:18266774 G/A 8.08E-5 404 14.9 16.3 11.82 KM Plot
LGG rs243036 chr2:60599312 G/C 5.51E-5 400 15.2 17.82 8.03 KM Plot
LGG rs2431401 chr5:156012054 G/C 0.000216 405 16.77 13.7 15.13 KM Plot
LGG rs2431769 chr5:155985033 G/A 4.41E-5 407 15.7 15.17 15.13 KM Plot
LGG rs2431770 chr5:155961088 G/A 5.06E-6 407 15.33 15.17 15.37 KM Plot
LGG rs2436327 chr5:156012048 T/C 9.96E-5 406 15.57 15.32 11.63 KM Plot